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ete ncbiquery: Fast and handy queries to the NCBI taxonomy database

自动蜘蛛 etetoolkit.org 正文约 505 字
You can also dump an annotated newick tree, each node including taxid, lineage_track, sci_name and rank features.
ete-ncbiquery can be combined with other UNIX commands and piped to ete-view in order to produce annotated tree images
If only one taxid or taxa names is supplied, the tree containing all its descendant taxa will be dumped
ETE 3: Reconstruction, analysis and visualization of phylogenomic data. Jaime Huerta-Cepas, Francois Serra and Peer Bork. Mol Biol Evol 2016; doi: 10.1093/molbev/msw046
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